NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
6,247.7 |
| Mean read quality |
7.6 |
| Median read length |
5,717.5 |
| Median read quality |
8.3 |
| Number of reads |
20,346.0 |
| Read length N50 |
8,295.0 |
| STDEV read length |
3,876.2 |
| Total bases |
127,116,621.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
20329 (99.9%) 127.0Mb |
| >Q7 |
16902 (83.1%) 105.6Mb |
| >Q10 |
1681 (8.3%) 10.2Mb |
| >Q12 |
0 (0.0%) 0.0Mb |
| >Q15 |
0 (0.0%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
11.8 (18072) |
| 2 |
11.7 (2500) |
| 3 |
11.6 (10033) |
| 4 |
11.6 (1670) |
| 5 |
11.6 (1794) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
28549 (10.1) |
| 2 |
28201 (9.0) |
| 3 |
27470 (7.8) |
| 4 |
26422 (7.0) |
| 5 |
26389 (7.2) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot