NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
3,187.5 |
| Mean read quality |
7.6 |
| Median read length |
3,059.0 |
| Median read quality |
8.3 |
| Number of reads |
68,961.0 |
| Read length N50 |
3,800.0 |
| STDEV read length |
1,481.3 |
| Total bases |
219,814,291.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
68890 (99.9%) 219.6Mb |
| >Q7 |
57142 (82.9%) 183.5Mb |
| >Q10 |
5832 (8.5%) 19.1Mb |
| >Q12 |
1 (0.0%) 0.0Mb |
| >Q15 |
0 (0.0%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
12.0 (4837) |
| 2 |
11.9 (2577) |
| 3 |
11.9 (2250) |
| 4 |
11.8 (759) |
| 5 |
11.8 (900) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
17073 (8.4) |
| 2 |
16420 (7.2) |
| 3 |
15311 (9.5) |
| 4 |
14764 (7.8) |
| 5 |
14223 (5.8) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot