NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
4,360.2 |
| Mean read quality |
9.7 |
| Median read length |
3,562.0 |
| Median read quality |
10.8 |
| Number of reads |
35,739.0 |
| Read length N50 |
6,126.0 |
| STDEV read length |
3,255.5 |
| Total bases |
155,828,077.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
35617 (99.7%) 155.7Mb |
| >Q7 |
34533 (96.6%) 153.0Mb |
| >Q10 |
23455 (65.6%) 105.7Mb |
| >Q12 |
8436 (23.6%) 38.3Mb |
| >Q15 |
3 (0.0%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
15.2 (1282) |
| 2 |
15.1 (6016) |
| 3 |
15.0 (1206) |
| 4 |
15.0 (2960) |
| 5 |
15.0 (6175) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
43581 (11.4) |
| 2 |
39819 (10.6) |
| 3 |
34726 (10.0) |
| 4 |
32327 (10.1) |
| 5 |
31449 (13.3) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot