NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
2,881.6 |
| Mean read quality |
9.6 |
| Median read length |
1,616.0 |
| Median read quality |
10.5 |
| Number of reads |
147,141.0 |
| Read length N50 |
5,527.0 |
| STDEV read length |
3,057.1 |
| Total bases |
424,008,521.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
147008 (99.9%) 423.9Mb |
| >Q7 |
143131 (97.3%) 416.1Mb |
| >Q10 |
89010 (60.5%) 271.5Mb |
| >Q12 |
28597 (19.4%) 94.5Mb |
| >Q15 |
16 (0.0%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
15.4 (636) |
| 2 |
15.4 (1835) |
| 3 |
15.3 (2896) |
| 4 |
15.3 (387) |
| 5 |
15.3 (730) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
91606 (6.5) |
| 2 |
41430 (7.5) |
| 3 |
39992 (10.4) |
| 4 |
35918 (10.7) |
| 5 |
34872 (10.2) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot