NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
3,403.5 |
| Mean read quality |
9.8 |
| Median read length |
2,701.0 |
| Median read quality |
10.7 |
| Number of reads |
149,496.0 |
| Read length N50 |
4,734.0 |
| STDEV read length |
2,468.2 |
| Total bases |
508,815,660.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
149459 (100.0%) 508.8Mb |
| >Q7 |
146528 (98.0%) 501.1Mb |
| >Q10 |
96997 (64.9%) 337.1Mb |
| >Q12 |
33540 (22.4%) 118.2Mb |
| >Q15 |
10 (0.0%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
16.2 (814) |
| 2 |
15.6 (523) |
| 3 |
15.4 (995) |
| 4 |
15.3 (5175) |
| 5 |
15.3 (1387) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
41109 (5.7) |
| 2 |
33360 (11.7) |
| 3 |
31738 (9.1) |
| 4 |
30494 (9.8) |
| 5 |
29495 (11.9) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot