NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
1,730.6 |
| Mean read quality |
9.6 |
| Median read length |
774.0 |
| Median read quality |
10.5 |
| Number of reads |
257,546.0 |
| Read length N50 |
3,839.0 |
| STDEV read length |
2,133.0 |
| Total bases |
445,715,504.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
257460 (100.0%) 445.7Mb |
| >Q7 |
252146 (97.9%) 439.4Mb |
| >Q10 |
154985 (60.2%) 292.5Mb |
| >Q12 |
44538 (17.3%) 98.1Mb |
| >Q15 |
29 (0.0%) 0.1Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
15.5 (503) |
| 2 |
15.5 (4443) |
| 3 |
15.5 (927) |
| 4 |
15.5 (3128) |
| 5 |
15.4 (2414) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
144066 (6.1) |
| 2 |
41186 (8.2) |
| 3 |
35263 (5.8) |
| 4 |
31173 (9.2) |
| 5 |
30829 (12.0) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot