NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
4,370.7 |
| Mean read quality |
9.8 |
| Median read length |
3,729.0 |
| Median read quality |
10.8 |
| Number of reads |
94,640.0 |
| Read length N50 |
5,971.0 |
| STDEV read length |
3,134.6 |
| Total bases |
413,640,803.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
94586 (99.9%) 413.6Mb |
| >Q7 |
92694 (97.9%) 407.3Mb |
| >Q10 |
62267 (65.8%) 276.9Mb |
| >Q12 |
22089 (23.3%) 97.9Mb |
| >Q15 |
9 (0.0%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
15.6 (7448) |
| 2 |
15.5 (14686) |
| 3 |
15.5 (2370) |
| 4 |
15.4 (1816) |
| 5 |
15.4 (3585) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
131602 (6.0) |
| 2 |
78705 (6.1) |
| 3 |
72162 (6.9) |
| 4 |
53026 (5.6) |
| 5 |
41437 (7.5) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot