NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
3,318.2 |
| Mean read quality |
9.7 |
| Median read length |
2,348.0 |
| Median read quality |
10.6 |
| Number of reads |
81,866.0 |
| Read length N50 |
5,702.0 |
| STDEV read length |
3,116.8 |
| Total bases |
271,648,532.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
81817 (99.9%) 271.6Mb |
| >Q7 |
80071 (97.8%) 267.3Mb |
| >Q10 |
51793 (63.3%) 181.8Mb |
| >Q12 |
17023 (20.8%) 63.9Mb |
| >Q15 |
11 (0.0%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
15.7 (4573) |
| 2 |
15.5 (5105) |
| 3 |
15.5 (4155) |
| 4 |
15.4 (4962) |
| 5 |
15.2 (1239) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
79454 (5.6) |
| 2 |
39323 (10.5) |
| 3 |
38082 (9.5) |
| 4 |
36085 (9.5) |
| 5 |
33102 (10.0) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot