NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
3,526.5 |
| Mean read quality |
9.8 |
| Median read length |
2,728.0 |
| Median read quality |
10.7 |
| Number of reads |
115,576.0 |
| Read length N50 |
5,090.0 |
| STDEV read length |
2,760.0 |
| Total bases |
407,584,400.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
115527 (100.0%) 407.5Mb |
| >Q7 |
113802 (98.5%) 402.9Mb |
| >Q10 |
75511 (65.3%) 271.4Mb |
| >Q12 |
25405 (22.0%) 92.4Mb |
| >Q15 |
3 (0.0%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
15.9 (2499) |
| 2 |
15.1 (3058) |
| 3 |
15.0 (1517) |
| 4 |
15.0 (1019) |
| 5 |
14.9 (1526) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
68363 (6.1) |
| 2 |
45038 (11.9) |
| 3 |
39270 (9.6) |
| 4 |
32883 (12.8) |
| 5 |
32153 (9.1) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot