NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
2,358.6 |
| Mean read quality |
9.4 |
| Median read length |
1,235.0 |
| Median read quality |
10.4 |
| Number of reads |
152,257.0 |
| Read length N50 |
4,652.0 |
| STDEV read length |
2,601.6 |
| Total bases |
359,110,039.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
152187 (100.0%) 359.1Mb |
| >Q7 |
147883 (97.1%) 351.8Mb |
| >Q10 |
87903 (57.7%) 224.0Mb |
| >Q12 |
26284 (17.3%) 74.2Mb |
| >Q15 |
3 (0.0%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
15.2 (446) |
| 2 |
15.1 (432) |
| 3 |
15.0 (772) |
| 4 |
15.0 (3523) |
| 5 |
15.0 (2958) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
42900 (10.3) |
| 2 |
36755 (11.4) |
| 3 |
35683 (12.2) |
| 4 |
35586 (6.6) |
| 5 |
34107 (12.5) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot