NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
4,178.2 |
| Mean read quality |
9.8 |
| Median read length |
3,149.0 |
| Median read quality |
10.8 |
| Number of reads |
64,943.0 |
| Read length N50 |
6,000.0 |
| STDEV read length |
3,471.4 |
| Total bases |
271,343,146.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
64874 (99.9%) 271.3Mb |
| >Q7 |
63416 (97.6%) 267.1Mb |
| >Q10 |
43089 (66.3%) 182.8Mb |
| >Q12 |
14960 (23.0%) 64.7Mb |
| >Q15 |
7 (0.0%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
15.5 (1213) |
| 2 |
15.4 (1813) |
| 3 |
15.2 (3423) |
| 4 |
15.1 (8917) |
| 5 |
15.0 (2700) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
51899 (5.7) |
| 2 |
50841 (7.8) |
| 3 |
45652 (9.8) |
| 4 |
43309 (10.0) |
| 5 |
42330 (9.6) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot