NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
2,634.5 |
| Mean read quality |
9.5 |
| Median read length |
1,283.0 |
| Median read quality |
10.5 |
| Number of reads |
100,290.0 |
| Read length N50 |
5,484.0 |
| STDEV read length |
3,196.4 |
| Total bases |
264,214,283.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
100195 (99.9%) 264.2Mb |
| >Q7 |
97622 (97.3%) 259.9Mb |
| >Q10 |
60236 (60.1%) 172.5Mb |
| >Q12 |
18720 (18.7%) 58.3Mb |
| >Q15 |
8 (0.0%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
15.7 (469) |
| 2 |
15.4 (431) |
| 3 |
15.3 (512) |
| 4 |
15.3 (880) |
| 5 |
15.2 (1624) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
141430 (7.6) |
| 2 |
46609 (12.3) |
| 3 |
40748 (12.6) |
| 4 |
39126 (10.1) |
| 5 |
38400 (10.2) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot