NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
3,951.8 |
| Mean read quality |
9.8 |
| Median read length |
3,398.0 |
| Median read quality |
10.7 |
| Number of reads |
92,328.0 |
| Read length N50 |
5,304.0 |
| STDEV read length |
2,655.0 |
| Total bases |
364,857,728.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
92218 (99.9%) 364.8Mb |
| >Q7 |
90541 (98.1%) 360.0Mb |
| >Q10 |
59996 (65.0%) 240.4Mb |
| >Q12 |
20719 (22.4%) 83.0Mb |
| >Q15 |
12 (0.0%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
15.6 (1328) |
| 2 |
15.5 (1740) |
| 3 |
15.4 (7056) |
| 4 |
15.3 (1401) |
| 5 |
15.3 (1905) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
71366 (10.4) |
| 2 |
51507 (6.5) |
| 3 |
45587 (6.8) |
| 4 |
39404 (8.0) |
| 5 |
34878 (6.8) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot