NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
2,923.9 |
| Mean read quality |
9.7 |
| Median read length |
2,018.0 |
| Median read quality |
10.6 |
| Number of reads |
141,042.0 |
| Read length N50 |
5,018.0 |
| STDEV read length |
2,735.1 |
| Total bases |
412,396,405.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
140977 (100.0%) 412.3Mb |
| >Q7 |
138396 (98.1%) 406.7Mb |
| >Q10 |
87710 (62.2%) 270.2Mb |
| >Q12 |
27431 (19.4%) 91.8Mb |
| >Q15 |
3 (0.0%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
15.4 (548) |
| 2 |
15.2 (2488) |
| 3 |
15.1 (2723) |
| 4 |
15.0 (4624) |
| 5 |
15.0 (959) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
203265 (8.4) |
| 2 |
91830 (6.6) |
| 3 |
31885 (10.4) |
| 4 |
31604 (11.5) |
| 5 |
31462 (12.5) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot