NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
2,276.6 |
| Mean read quality |
10.2 |
| Median read length |
1,172.0 |
| Median read quality |
11.2 |
| Number of reads |
138,362.0 |
| Read length N50 |
4,454.0 |
| STDEV read length |
2,473.7 |
| Total bases |
314,990,424.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
138349 (100.0%) 315.0Mb |
| >Q7 |
137223 (99.2%) 313.2Mb |
| >Q10 |
106315 (76.8%) 251.4Mb |
| >Q12 |
34033 (24.6%) 92.1Mb |
| >Q15 |
1 (0.0%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
15.0 (608) |
| 2 |
14.8 (547) |
| 3 |
14.8 (3988) |
| 4 |
14.7 (517) |
| 5 |
14.6 (527) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
38666 (11.3) |
| 2 |
35533 (12.6) |
| 3 |
29233 (11.1) |
| 4 |
27452 (11.2) |
| 5 |
26389 (9.8) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot