NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
1,757.0 |
| Mean read quality |
10.2 |
| Median read length |
1,179.0 |
| Median read quality |
11.2 |
| Number of reads |
125,533.0 |
| Read length N50 |
2,613.0 |
| STDEV read length |
1,673.6 |
| Total bases |
220,557,589.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
125509 (100.0%) 220.5Mb |
| >Q7 |
124772 (99.4%) 219.7Mb |
| >Q10 |
97383 (77.6%) 176.8Mb |
| >Q12 |
30548 (24.3%) 61.6Mb |
| >Q15 |
0 (0.0%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
15.0 (3644) |
| 2 |
14.8 (1197) |
| 3 |
14.7 (1475) |
| 4 |
14.7 (836) |
| 5 |
14.7 (372) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
65816 (7.3) |
| 2 |
63659 (7.2) |
| 3 |
33507 (6.7) |
| 4 |
24413 (11.3) |
| 5 |
23152 (10.6) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot