NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
810.2 |
| Mean read quality |
10.2 |
| Median read length |
625.0 |
| Median read quality |
11.1 |
| Number of reads |
144,593.0 |
| Read length N50 |
852.0 |
| STDEV read length |
648.2 |
| Total bases |
117,154,148.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
144575 (100.0%) 117.1Mb |
| >Q7 |
143374 (99.2%) 116.3Mb |
| >Q10 |
110986 (76.8%) 92.2Mb |
| >Q12 |
31468 (21.8%) 28.8Mb |
| >Q15 |
2 (0.0%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
15.1 (741) |
| 2 |
15.0 (521) |
| 3 |
15.0 (527) |
| 4 |
14.9 (563) |
| 5 |
14.9 (570) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
23218 (6.3) |
| 2 |
18945 (11.3) |
| 3 |
17676 (10.0) |
| 4 |
15871 (9.4) |
| 5 |
15260 (12.7) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot