NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
1,556.2 |
| Mean read quality |
10.2 |
| Median read length |
799.0 |
| Median read quality |
11.1 |
| Number of reads |
213,456.0 |
| Read length N50 |
2,818.0 |
| STDEV read length |
1,907.2 |
| Total bases |
332,180,254.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
213425 (100.0%) 332.2Mb |
| >Q7 |
211960 (99.3%) 330.6Mb |
| >Q10 |
161541 (75.7%) 264.6Mb |
| >Q12 |
49083 (23.0%) 93.7Mb |
| >Q15 |
0 (0.0%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
14.9 (439) |
| 2 |
14.8 (481) |
| 3 |
14.7 (507) |
| 4 |
14.7 (851) |
| 5 |
14.7 (413) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
94598 (6.1) |
| 2 |
27722 (10.5) |
| 3 |
25225 (11.3) |
| 4 |
25146 (10.1) |
| 5 |
24574 (9.4) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot