NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
1,369.5 |
| Mean read quality |
10.1 |
| Median read length |
1,024.0 |
| Median read quality |
11.1 |
| Number of reads |
234,950.0 |
| Read length N50 |
1,866.0 |
| STDEV read length |
1,059.7 |
| Total bases |
321,754,365.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
234926 (100.0%) 321.7Mb |
| >Q7 |
232778 (99.1%) 319.5Mb |
| >Q10 |
175216 (74.6%) 249.2Mb |
| >Q12 |
54835 (23.3%) 86.6Mb |
| >Q15 |
0 (0.0%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
14.9 (1761) |
| 2 |
14.9 (1631) |
| 3 |
14.8 (543) |
| 4 |
14.7 (429) |
| 5 |
14.6 (1832) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
19458 (10.6) |
| 2 |
16694 (12.5) |
| 3 |
16250 (9.9) |
| 4 |
16009 (12.7) |
| 5 |
15828 (10.8) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot