NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
1,720.9 |
| Mean read quality |
10.2 |
| Median read length |
883.0 |
| Median read quality |
11.2 |
| Number of reads |
137,702.0 |
| Read length N50 |
3,288.0 |
| STDEV read length |
1,796.0 |
| Total bases |
236,968,885.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
137670 (100.0%) 237.0Mb |
| >Q7 |
136611 (99.2%) 235.9Mb |
| >Q10 |
105692 (76.8%) 191.2Mb |
| >Q12 |
32702 (23.7%) 70.0Mb |
| >Q15 |
2 (0.0%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
15.6 (492) |
| 2 |
15.1 (677) |
| 3 |
15.0 (6980) |
| 4 |
14.9 (1770) |
| 5 |
14.9 (407) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
36982 (12.3) |
| 2 |
30894 (10.8) |
| 3 |
23154 (9.9) |
| 4 |
22252 (12.2) |
| 5 |
22148 (10.7) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot