NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
1,055.2 |
| Mean read quality |
10.1 |
| Median read length |
660.0 |
| Median read quality |
11.1 |
| Number of reads |
268,460.0 |
| Read length N50 |
1,363.0 |
| STDEV read length |
1,137.1 |
| Total bases |
283,284,940.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
268434 (100.0%) 283.3Mb |
| >Q7 |
266276 (99.2%) 281.6Mb |
| >Q10 |
201444 (75.0%) 222.0Mb |
| >Q12 |
57300 (21.3%) 72.7Mb |
| >Q15 |
2 (0.0%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
15.3 (291) |
| 2 |
15.0 (538) |
| 3 |
14.9 (1552) |
| 4 |
14.8 (1299) |
| 5 |
14.8 (495) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
20102 (9.9) |
| 2 |
19644 (10.4) |
| 3 |
19090 (9.5) |
| 4 |
18332 (12.6) |
| 5 |
17399 (10.7) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot