NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
1,465.5 |
| Mean read quality |
10.1 |
| Median read length |
833.0 |
| Median read quality |
11.2 |
| Number of reads |
148,622.0 |
| Read length N50 |
2,231.0 |
| STDEV read length |
1,818.2 |
| Total bases |
217,805,965.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
148586 (100.0%) 217.8Mb |
| >Q7 |
147313 (99.1%) 216.5Mb |
| >Q10 |
112467 (75.7%) 171.9Mb |
| >Q12 |
35478 (23.9%) 60.4Mb |
| >Q15 |
2 (0.0%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
15.0 (1097) |
| 2 |
15.0 (1240) |
| 3 |
14.9 (719) |
| 4 |
14.9 (459) |
| 5 |
14.9 (1963) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
47958 (12.0) |
| 2 |
34360 (10.0) |
| 3 |
31281 (10.0) |
| 4 |
30277 (12.6) |
| 5 |
27859 (8.4) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot