NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
1,592.9 |
| Mean read quality |
10.2 |
| Median read length |
1,114.0 |
| Median read quality |
11.2 |
| Number of reads |
176,733.0 |
| Read length N50 |
2,343.0 |
| STDEV read length |
1,350.9 |
| Total bases |
281,525,584.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
176704 (100.0%) 281.5Mb |
| >Q7 |
175383 (99.2%) 280.0Mb |
| >Q10 |
135409 (76.6%) 224.0Mb |
| >Q12 |
43944 (24.9%) 81.5Mb |
| >Q15 |
3 (0.0%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
15.1 (501) |
| 2 |
15.1 (1753) |
| 3 |
15.0 (606) |
| 4 |
15.0 (432) |
| 5 |
14.9 (3823) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
29982 (5.6) |
| 2 |
25923 (8.1) |
| 3 |
18772 (11.1) |
| 4 |
18505 (10.0) |
| 5 |
18032 (9.8) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot