NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
2,173.4 |
| Mean read quality |
9.8 |
| Median read length |
1,054.0 |
| Median read quality |
10.9 |
| Number of reads |
90,136.0 |
| Read length N50 |
4,407.0 |
| STDEV read length |
2,782.8 |
| Total bases |
195,903,493.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
90012 (99.9%) 195.8Mb |
| >Q7 |
88059 (97.7%) 193.1Mb |
| >Q10 |
61960 (68.7%) 141.2Mb |
| >Q12 |
15909 (17.6%) 42.4Mb |
| >Q15 |
0 (0.0%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
14.9 (445) |
| 2 |
14.7 (475) |
| 3 |
14.6 (552) |
| 4 |
14.6 (412) |
| 5 |
14.5 (1429) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
33637 (8.7) |
| 2 |
33010 (10.0) |
| 3 |
32328 (11.0) |
| 4 |
32038 (10.7) |
| 5 |
29873 (11.2) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot