NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
1,943.0 |
| Mean read quality |
9.8 |
| Median read length |
912.0 |
| Median read quality |
10.8 |
| Number of reads |
96,239.0 |
| Read length N50 |
4,090.0 |
| STDEV read length |
2,682.8 |
| Total bases |
186,990,960.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
96212 (100.0%) 187.0Mb |
| >Q7 |
94183 (97.9%) 184.4Mb |
| >Q10 |
65819 (68.4%) 134.8Mb |
| >Q12 |
15935 (16.6%) 39.3Mb |
| >Q15 |
0 (0.0%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
14.9 (523) |
| 2 |
14.8 (637) |
| 3 |
14.8 (641) |
| 4 |
14.7 (706) |
| 5 |
14.5 (2092) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
41157 (10.6) |
| 2 |
33280 (10.6) |
| 3 |
33146 (10.0) |
| 4 |
32328 (10.4) |
| 5 |
32012 (8.8) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot