NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
1,573.7 |
| Mean read quality |
9.6 |
| Median read length |
685.0 |
| Median read quality |
10.7 |
| Number of reads |
164,733.0 |
| Read length N50 |
4,026.0 |
| STDEV read length |
2,305.3 |
| Total bases |
259,235,678.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
164704 (100.0%) 259.2Mb |
| >Q7 |
160380 (97.4%) 255.0Mb |
| >Q10 |
106657 (64.7%) 178.5Mb |
| >Q12 |
25450 (15.4%) 52.1Mb |
| >Q15 |
0 (0.0%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
14.9 (812) |
| 2 |
14.8 (490) |
| 3 |
14.7 (439) |
| 4 |
14.6 (466) |
| 5 |
14.6 (830) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
83417 (7.2) |
| 2 |
44904 (8.8) |
| 3 |
31465 (10.1) |
| 4 |
31320 (11.3) |
| 5 |
30657 (11.8) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot