NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
2,834.8 |
| Mean read quality |
9.7 |
| Median read length |
2,003.0 |
| Median read quality |
10.8 |
| Number of reads |
121,712.0 |
| Read length N50 |
4,745.0 |
| STDEV read length |
2,494.8 |
| Total bases |
345,028,980.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
121669 (100.0%) 345.0Mb |
| >Q7 |
118624 (97.5%) 339.0Mb |
| >Q10 |
80241 (65.9%) 238.6Mb |
| >Q12 |
21913 (18.0%) 72.7Mb |
| >Q15 |
0 (0.0%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
14.8 (794) |
| 2 |
14.6 (4794) |
| 3 |
14.6 (869) |
| 4 |
14.6 (1457) |
| 5 |
14.6 (1312) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
116705 (6.4) |
| 2 |
37395 (10.3) |
| 3 |
35564 (6.1) |
| 4 |
24866 (12.4) |
| 5 |
24553 (11.7) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot