NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
3,886.9 |
| Mean read quality |
9.8 |
| Median read length |
2,723.0 |
| Median read quality |
10.9 |
| Number of reads |
49,183.0 |
| Read length N50 |
7,129.0 |
| STDEV read length |
3,769.6 |
| Total bases |
191,171,655.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
49145 (99.9%) 191.1Mb |
| >Q7 |
47707 (97.0%) 188.3Mb |
| >Q10 |
34077 (69.3%) 142.0Mb |
| >Q12 |
10054 (20.4%) 46.6Mb |
| >Q15 |
0 (0.0%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
14.5 (548) |
| 2 |
14.5 (8439) |
| 3 |
14.5 (4953) |
| 4 |
14.4 (5303) |
| 5 |
14.4 (3397) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
175038 (5.9) |
| 2 |
48671 (5.7) |
| 3 |
37925 (10.3) |
| 4 |
31704 (7.9) |
| 5 |
27269 (8.8) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot