NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
3,936.8 |
| Mean read quality |
9.8 |
| Median read length |
2,878.5 |
| Median read quality |
10.9 |
| Number of reads |
45,958.0 |
| Read length N50 |
7,044.0 |
| STDEV read length |
3,654.7 |
| Total bases |
180,928,439.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
45930 (99.9%) 180.9Mb |
| >Q7 |
44657 (97.2%) 178.4Mb |
| >Q10 |
31704 (69.0%) 132.8Mb |
| >Q12 |
9665 (21.0%) 43.8Mb |
| >Q15 |
1 (0.0%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
15.3 (8717) |
| 2 |
14.8 (413) |
| 3 |
14.7 (4850) |
| 4 |
14.5 (7256) |
| 5 |
14.5 (451) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
39189 (11.8) |
| 2 |
36688 (10.8) |
| 3 |
32459 (11.8) |
| 4 |
30843 (12.2) |
| 5 |
26656 (9.8) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot