NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
4,563.3 |
| Mean read quality |
9.8 |
| Median read length |
3,461.0 |
| Median read quality |
11.0 |
| Number of reads |
73,364.0 |
| Read length N50 |
7,903.0 |
| STDEV read length |
4,072.0 |
| Total bases |
334,784,957.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
73317 (99.9%) 334.8Mb |
| >Q7 |
71628 (97.6%) 330.6Mb |
| >Q10 |
50942 (69.4%) 244.4Mb |
| >Q12 |
16038 (21.9%) 82.7Mb |
| >Q15 |
0 (0.0%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
14.9 (682) |
| 2 |
14.9 (480) |
| 3 |
14.7 (456) |
| 4 |
14.7 (455) |
| 5 |
14.5 (3996) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
196321 (8.0) |
| 2 |
40327 (9.1) |
| 3 |
35055 (8.5) |
| 4 |
32493 (10.8) |
| 5 |
31276 (10.2) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot