NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
4,596.4 |
| Mean read quality |
9.9 |
| Median read length |
3,590.0 |
| Median read quality |
11.0 |
| Number of reads |
61,375.0 |
| Read length N50 |
7,775.0 |
| STDEV read length |
3,919.9 |
| Total bases |
282,101,320.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
61352 (100.0%) 282.1Mb |
| >Q7 |
60228 (98.1%) 279.1Mb |
| >Q10 |
43055 (70.2%) 208.2Mb |
| >Q12 |
13363 (21.8%) 70.2Mb |
| >Q15 |
0 (0.0%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
15.0 (875) |
| 2 |
14.9 (1496) |
| 3 |
14.8 (490) |
| 4 |
14.8 (761) |
| 5 |
14.7 (6607) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
34263 (9.8) |
| 2 |
30300 (11.3) |
| 3 |
29177 (12.7) |
| 4 |
27906 (10.0) |
| 5 |
27825 (10.8) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot