NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
1,450.2 |
| Mean read quality |
10.6 |
| Median read length |
643.0 |
| Median read quality |
11.5 |
| Number of reads |
70,276.0 |
| Read length N50 |
3,412.0 |
| STDEV read length |
2,182.4 |
| Total bases |
101,914,832.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
70275 (100.0%) 101.9Mb |
| >Q7 |
70248 (100.0%) 101.9Mb |
| >Q10 |
57391 (81.7%) 86.6Mb |
| >Q12 |
25282 (36.0%) 45.0Mb |
| >Q15 |
9 (0.0%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
15.3 (437) |
| 2 |
15.2 (985) |
| 3 |
15.1 (473) |
| 4 |
15.1 (589) |
| 5 |
15.1 (519) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
58687 (11.3) |
| 2 |
29283 (11.9) |
| 3 |
28974 (11.1) |
| 4 |
27396 (11.2) |
| 5 |
26792 (11.1) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot