NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
2,998.2 |
| Mean read quality |
10.9 |
| Median read length |
2,463.0 |
| Median read quality |
11.8 |
| Number of reads |
66,585.0 |
| Read length N50 |
4,744.0 |
| STDEV read length |
2,376.1 |
| Total bases |
199,633,856.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
66585 (100.0%) 199.6Mb |
| >Q7 |
66569 (100.0%) 199.6Mb |
| >Q10 |
57985 (87.1%) 177.6Mb |
| >Q12 |
30441 (45.7%) 99.5Mb |
| >Q15 |
6 (0.0%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
15.4 (2975) |
| 2 |
15.2 (899) |
| 3 |
15.1 (3062) |
| 4 |
15.1 (562) |
| 5 |
15.0 (3136) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
24930 (9.1) |
| 2 |
21712 (10.6) |
| 3 |
20937 (10.6) |
| 4 |
20789 (11.0) |
| 5 |
20010 (11.2) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot