NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
3,077.6 |
| Mean read quality |
10.9 |
| Median read length |
2,603.0 |
| Median read quality |
11.9 |
| Number of reads |
44,776.0 |
| Read length N50 |
4,793.0 |
| STDEV read length |
2,372.3 |
| Total bases |
137,801,405.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
44776 (100.0%) 137.8Mb |
| >Q7 |
44762 (100.0%) 137.8Mb |
| >Q10 |
39271 (87.7%) 123.0Mb |
| >Q12 |
20632 (46.1%) 69.7Mb |
| >Q15 |
7 (0.0%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
15.3 (505) |
| 2 |
15.3 (1472) |
| 3 |
15.1 (4796) |
| 4 |
15.1 (3636) |
| 5 |
15.1 (950) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
37144 (7.6) |
| 2 |
24590 (8.4) |
| 3 |
20350 (11.3) |
| 4 |
18527 (12.6) |
| 5 |
16669 (9.3) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot