NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
3,752.3 |
| Mean read quality |
10.9 |
| Median read length |
2,533.0 |
| Median read quality |
11.9 |
| Number of reads |
38,899.0 |
| Read length N50 |
6,875.0 |
| STDEV read length |
3,599.5 |
| Total bases |
145,959,331.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
38899 (100.0%) 146.0Mb |
| >Q7 |
38886 (100.0%) 146.0Mb |
| >Q10 |
33989 (87.4%) 131.2Mb |
| >Q12 |
17843 (45.9%) 74.9Mb |
| >Q15 |
2 (0.0%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
15.5 (1442) |
| 2 |
15.5 (515) |
| 3 |
15.0 (10596) |
| 4 |
14.9 (1312) |
| 5 |
14.9 (5722) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
40833 (11.8) |
| 2 |
40068 (11.5) |
| 3 |
33196 (12.7) |
| 4 |
31820 (11.5) |
| 5 |
31751 (12.8) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot