NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
3,559.6 |
| Mean read quality |
10.9 |
| Median read length |
2,587.0 |
| Median read quality |
11.8 |
| Number of reads |
37,465.0 |
| Read length N50 |
6,376.0 |
| STDEV read length |
3,201.4 |
| Total bases |
133,361,430.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
37465 (100.0%) 133.4Mb |
| >Q7 |
37452 (100.0%) 133.3Mb |
| >Q10 |
32076 (85.6%) 118.3Mb |
| >Q12 |
16407 (43.8%) 65.9Mb |
| >Q15 |
4 (0.0%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
15.9 (510) |
| 2 |
15.2 (1445) |
| 3 |
15.1 (6123) |
| 4 |
15.1 (676) |
| 5 |
15.0 (629) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
27724 (11.2) |
| 2 |
26018 (11.4) |
| 3 |
21888 (10.8) |
| 4 |
21301 (12.1) |
| 5 |
21181 (11.2) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot