NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
2,034.6 |
| Mean read quality |
11.0 |
| Median read length |
1,796.0 |
| Median read quality |
11.9 |
| Number of reads |
58,221.0 |
| Read length N50 |
2,864.0 |
| STDEV read length |
1,388.9 |
| Total bases |
118,453,702.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
58221 (100.0%) 118.5Mb |
| >Q7 |
58203 (100.0%) 118.4Mb |
| >Q10 |
51174 (87.9%) 105.7Mb |
| >Q12 |
26885 (46.2%) 58.8Mb |
| >Q15 |
9 (0.0%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
15.8 (552) |
| 2 |
15.4 (416) |
| 3 |
15.4 (1350) |
| 4 |
15.3 (476) |
| 5 |
15.3 (1305) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
24205 (12.1) |
| 2 |
18174 (13.1) |
| 3 |
16721 (13.2) |
| 4 |
13105 (12.2) |
| 5 |
12470 (12.0) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot