NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
2,000.0 |
| Mean read quality |
10.9 |
| Median read length |
1,742.0 |
| Median read quality |
11.8 |
| Number of reads |
53,338.0 |
| Read length N50 |
2,840.0 |
| STDEV read length |
1,388.5 |
| Total bases |
106,674,534.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
53338 (100.0%) 106.7Mb |
| >Q7 |
53326 (100.0%) 106.7Mb |
| >Q10 |
46638 (87.4%) 95.1Mb |
| >Q12 |
24352 (45.7%) 52.6Mb |
| >Q15 |
10 (0.0%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
15.2 (642) |
| 2 |
15.2 (428) |
| 3 |
15.1 (1153) |
| 4 |
15.1 (609) |
| 5 |
15.1 (1028) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
19886 (7.8) |
| 2 |
17954 (7.1) |
| 3 |
15572 (12.3) |
| 4 |
13802 (13.2) |
| 5 |
13215 (10.7) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot