NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
4,409.1 |
| Mean read quality |
10.9 |
| Median read length |
3,528.0 |
| Median read quality |
11.9 |
| Number of reads |
22,620.0 |
| Read length N50 |
7,453.0 |
| STDEV read length |
3,726.1 |
| Total bases |
99,732,953.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
22620 (100.0%) 99.7Mb |
| >Q7 |
22602 (99.9%) 99.7Mb |
| >Q10 |
19659 (86.9%) 89.1Mb |
| >Q12 |
10520 (46.5%) 50.9Mb |
| >Q15 |
1 (0.0%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
15.1 (773) |
| 2 |
15.0 (504) |
| 3 |
14.9 (1350) |
| 4 |
14.8 (648) |
| 5 |
14.8 (967) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
58123 (8.7) |
| 2 |
31498 (11.3) |
| 3 |
26343 (12.2) |
| 4 |
25107 (11.6) |
| 5 |
23586 (8.5) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot