NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
3,096.3 |
| Mean read quality |
11.2 |
| Median read length |
3,114.0 |
| Median read quality |
12.4 |
| Number of reads |
8,577.0 |
| Read length N50 |
3,486.0 |
| STDEV read length |
1,243.6 |
| Total bases |
26,557,294.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
8577 (100.0%) 26.6Mb |
| >Q7 |
8542 (99.6%) 26.5Mb |
| >Q10 |
7288 (85.0%) 23.2Mb |
| >Q12 |
5004 (58.3%) 16.3Mb |
| >Q15 |
218 (2.5%) 0.7Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
18.0 (2327) |
| 2 |
16.7 (639) |
| 3 |
16.6 (4666) |
| 4 |
16.5 (4657) |
| 5 |
16.5 (643) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
13130 (10.5) |
| 2 |
10374 (13.2) |
| 3 |
9781 (14.1) |
| 4 |
9757 (11.1) |
| 5 |
9753 (12.4) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot