NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
4,227.3 |
| Mean read quality |
10.8 |
| Median read length |
4,420.5 |
| Median read quality |
12.0 |
| Number of reads |
186.0 |
| Read length N50 |
4,920.0 |
| STDEV read length |
2,039.1 |
| Total bases |
786,272.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
186 (100.0%) 0.8Mb |
| >Q7 |
186 (100.0%) 0.8Mb |
| >Q10 |
146 (78.5%) 0.7Mb |
| >Q12 |
94 (50.5%) 0.4Mb |
| >Q15 |
1 (0.5%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
15.2 (1800) |
| 2 |
14.9 (2612) |
| 3 |
14.9 (5390) |
| 4 |
14.9 (5396) |
| 5 |
14.8 (4392) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
7692 (8.4) |
| 2 |
7669 (12.0) |
| 3 |
7664 (11.9) |
| 4 |
7660 (12.1) |
| 5 |
7611 (13.5) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot