NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
1,275.6 |
| Mean read quality |
8.5 |
| Median read length |
169.0 |
| Median read quality |
8.5 |
| Number of reads |
651.0 |
| Read length N50 |
3,465.0 |
| STDEV read length |
1,642.8 |
| Total bases |
830,448.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
651 (100.0%) 0.8Mb |
| >Q7 |
651 (100.0%) 0.8Mb |
| >Q10 |
207 (31.8%) 0.7Mb |
| >Q12 |
107 (16.4%) 0.4Mb |
| >Q15 |
0 (0.0%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
14.4 (2520) |
| 2 |
14.4 (2948) |
| 3 |
14.2 (2286) |
| 4 |
14.1 (2319) |
| 5 |
14.1 (5818) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
6670 (11.9) |
| 2 |
6336 (12.1) |
| 3 |
6142 (12.4) |
| 4 |
5975 (11.1) |
| 5 |
5818 (14.1) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot