NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
1,852.9 |
| Mean read quality |
11.4 |
| Median read length |
1,851.5 |
| Median read quality |
12.9 |
| Number of reads |
35,076.0 |
| Read length N50 |
2,144.0 |
| STDEV read length |
852.1 |
| Total bases |
64,993,168.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
35076 (100.0%) 65.0Mb |
| >Q7 |
35076 (100.0%) 65.0Mb |
| >Q10 |
29485 (84.1%) 57.5Mb |
| >Q12 |
22509 (64.2%) 45.3Mb |
| >Q15 |
3601 (10.3%) 7.9Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
18.3 (1888) |
| 2 |
18.2 (1470) |
| 3 |
18.0 (3103) |
| 4 |
17.9 (2379) |
| 5 |
17.9 (2456) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
7032 (10.6) |
| 2 |
6896 (7.4) |
| 3 |
6848 (10.6) |
| 4 |
6434 (14.0) |
| 5 |
6285 (13.4) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot