NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
2,824.7 |
| Mean read quality |
12.3 |
| Median read length |
2,750.0 |
| Median read quality |
13.6 |
| Number of reads |
3,664.0 |
| Read length N50 |
3,016.0 |
| STDEV read length |
940.5 |
| Total bases |
10,349,542.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
3664 (100.0%) 10.3Mb |
| >Q7 |
3664 (100.0%) 10.3Mb |
| >Q10 |
3407 (93.0%) 9.7Mb |
| >Q12 |
2854 (77.9%) 8.2Mb |
| >Q15 |
537 (14.7%) 1.6Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
17.1 (2278) |
| 2 |
17.0 (4402) |
| 3 |
16.9 (3163) |
| 4 |
16.9 (1791) |
| 5 |
16.9 (4814) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
8525 (13.3) |
| 2 |
7854 (13.6) |
| 3 |
7714 (13.6) |
| 4 |
7692 (12.1) |
| 5 |
6988 (14.4) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot