NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
2,575.4 |
| Mean read quality |
11.6 |
| Median read length |
2,616.0 |
| Median read quality |
13.0 |
| Number of reads |
22,794.0 |
| Read length N50 |
2,899.0 |
| STDEV read length |
1,005.9 |
| Total bases |
58,702,531.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
22794 (100.0%) 58.7Mb |
| >Q7 |
22794 (100.0%) 58.7Mb |
| >Q10 |
19827 (87.0%) 53.1Mb |
| >Q12 |
15368 (67.4%) 42.2Mb |
| >Q15 |
2168 (9.5%) 6.2Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
18.1 (3756) |
| 2 |
17.9 (2661) |
| 3 |
17.4 (3483) |
| 4 |
17.4 (3013) |
| 5 |
17.4 (2900) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
9856 (10.0) |
| 2 |
7646 (12.8) |
| 3 |
7526 (11.9) |
| 4 |
7474 (14.0) |
| 5 |
7268 (12.5) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot