NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
2,568.5 |
| Mean read quality |
11.4 |
| Median read length |
2,718.0 |
| Median read quality |
13.1 |
| Number of reads |
6,198.0 |
| Read length N50 |
3,070.0 |
| STDEV read length |
1,191.2 |
| Total bases |
15,919,385.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
6198 (100.0%) 15.9Mb |
| >Q7 |
6198 (100.0%) 15.9Mb |
| >Q10 |
5142 (83.0%) 14.4Mb |
| >Q12 |
4095 (66.1%) 11.9Mb |
| >Q15 |
846 (13.6%) 2.6Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
17.6 (4344) |
| 2 |
17.4 (2411) |
| 3 |
17.4 (3144) |
| 4 |
17.3 (2685) |
| 5 |
17.1 (3413) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
7350 (12.8) |
| 2 |
7105 (8.9) |
| 3 |
6585 (13.0) |
| 4 |
6427 (13.0) |
| 5 |
6299 (14.9) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot