NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
4,148.5 |
| Mean read quality |
10.7 |
| Median read length |
4,102.0 |
| Median read quality |
11.7 |
| Number of reads |
413,063.0 |
| Read length N50 |
4,484.0 |
| STDEV read length |
1,283.1 |
| Total bases |
1,713,604,914.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
413063 (100.0%) 1713.6Mb |
| >Q7 |
413063 (100.0%) 1713.6Mb |
| >Q10 |
347705 (84.2%) 1456.6Mb |
| >Q12 |
161769 (39.2%) 690.4Mb |
| >Q15 |
178 (0.0%) 0.7Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
16.3 (2897) |
| 2 |
16.3 (1447) |
| 3 |
16.3 (2617) |
| 4 |
16.1 (156) |
| 5 |
16.0 (5790) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
17417 (8.7) |
| 2 |
16175 (12.5) |
| 3 |
14306 (9.7) |
| 4 |
14066 (11.4) |
| 5 |
13957 (10.5) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot