NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
2,380.2 |
| Mean read quality |
9.5 |
| Median read length |
2,849.0 |
| Median read quality |
10.6 |
| Number of reads |
1,315.0 |
| Read length N50 |
4,188.0 |
| STDEV read length |
2,058.9 |
| Total bases |
3,129,955.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
1315 (100.0%) 3.1Mb |
| >Q7 |
1315 (100.0%) 3.1Mb |
| >Q10 |
710 (54.0%) 2.7Mb |
| >Q12 |
457 (34.8%) 1.8Mb |
| >Q15 |
11 (0.8%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
17.2 (3547) |
| 2 |
16.8 (3511) |
| 3 |
16.8 (3532) |
| 4 |
15.9 (2850) |
| 5 |
15.7 (3044) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
7499 (12.1) |
| 2 |
7335 (8.8) |
| 3 |
7183 (13.0) |
| 4 |
7070 (11.7) |
| 5 |
7057 (11.5) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot