NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
3,727.4 |
| Mean read quality |
11.4 |
| Median read length |
3,642.0 |
| Median read quality |
12.6 |
| Number of reads |
102,412.0 |
| Read length N50 |
4,091.0 |
| STDEV read length |
1,361.7 |
| Total bases |
381,725,447.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
102412 (100.0%) 381.7Mb |
| >Q7 |
102412 (100.0%) 381.7Mb |
| >Q10 |
88715 (86.6%) 335.9Mb |
| >Q12 |
62196 (60.7%) 238.0Mb |
| >Q15 |
5237 (5.1%) 20.1Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
17.9 (3160) |
| 2 |
17.7 (2635) |
| 3 |
17.6 (3488) |
| 4 |
17.6 (2197) |
| 5 |
17.6 (5461) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
14673 (13.7) |
| 2 |
14004 (10.3) |
| 3 |
13769 (10.5) |
| 4 |
12886 (14.5) |
| 5 |
12720 (13.4) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot