NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
3,236.4 |
| Mean read quality |
11.0 |
| Median read length |
3,558.5 |
| Median read quality |
12.5 |
| Number of reads |
4,076.0 |
| Read length N50 |
3,803.0 |
| STDEV read length |
1,337.1 |
| Total bases |
13,191,490.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
4076 (100.0%) 13.2Mb |
| >Q7 |
4076 (100.0%) 13.2Mb |
| >Q10 |
3337 (81.9%) 12.1Mb |
| >Q12 |
2471 (60.6%) 9.1Mb |
| >Q15 |
113 (2.8%) 0.4Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
17.0 (3575) |
| 2 |
16.5 (4274) |
| 3 |
16.4 (3613) |
| 4 |
16.4 (3604) |
| 5 |
16.3 (3471) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
6504 (8.2) |
| 2 |
6089 (9.3) |
| 3 |
5952 (13.5) |
| 4 |
5931 (13.9) |
| 5 |
5747 (13.7) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot